Cardiovascular Wave Analysis toolbox

Cardiovascular Wave Analysis toolbox

Scilab Cardiovascular Wave Analysis toolbox.

It provides tools for cardiovascular signal analysis:

  • ECG reading multi channel ECG files in various formats (ISHNE, MIT, TMS32)
  • handling huge ECG files obtained through Holter devices
  • multi channel ECG visualization
  • ECG pretreatment (filtering, subsampling, power line interference removal, base line wander removal)
  • ECG events detection (P, Q, R, S, T) peaks, onset and end
  • Time frequency tools for frequency evolution estimation
  • Cardiovascular signals (RR, SBP, Vt) analysis using complex demodulation
  • Cardiovascular signals (RR, SBP, Vt) analysis using Smoothed pseudo Wigner Ville decomposition.
  • Baroreflex analysis based on short term fourier transform
  • Specialized plotting facilities
  • Graphical user interface for analysis (HRVAS, ECGViewer, TimeFrequencyTool)

The main functions are:

  • Analysis
    • AddChannelPlot: Add a subplot to a graph generated by MultiChannelPlot.
    • Baroreflex_Analysis: Baroreflex analysis using multi channel non stationary signal analysis method
    • CDM_Analysis: Performs the analysis of a narrow band component of the RR signal using complex demodulation method.
    • CDM_SPWVD_Analysis: Performs the analysis of a narrow band component of the e RR signal using Smoothed Pseudo Wigner-Ville time-frequency distribution and complex demodulation methods.
    • check_npmcnssa_options: Checks options for np_mc_nss_analysis and Baroreflex_Analysis functions.
    • ComplexDemodulation: Perform demodulation of a narrow band signal using complex demodulation
    • DFA: Linear detrended fluctuation analysis
    • ECGWavesAnalysis: Computes length of specified QRS complex segments of the ECG beats.
    • ExportBaroreflexAnalysis: Export spectral analysis results into a csv or text file.
    • ExportSpectralAnalysis: Export spectral analysis results into a csv or text file.
    • HRVAS: Interactive and batch tool for Heart Rate Variation Analysis
    • MultiChannelPlot: Plot multi-channel signals using subplots.
    • np_mc_nss_analysis: Multi channel non stationnary signal analysis using short term fft.
    • PlotBaroreflexAnalysis: Visualization of the data computed by the Baroreflex_Analysis function.
    • PlotSpectralAnalysis: Visualization of the data computed by the CDM_Analysis, SPWVD_Analysis or CDM_SPWVD_Analysis functions.
    • ResampleRR: Resample a RR cardiovascular signal
    • RR_Spectrum: Estimates the power spectral density of a RR signal using the Lomb periodogram method.
    • SampEn: Measure of complexity using sample entropy
    • SPWVD_Analysis: Performs the analysis of a narrow band component of the RR signal using Smoothed Pseudo Wigner-Ville time-frequency distribution method.
    • TimeFrequencyTool: Tool based on time frequency methods
    • TimeMoments: Computes the time moments of a signal by smoothed pseudo Wigner-Ville distribution.
  • Detections
    • ECGContiguousDetections: Search for sequences of contiguous detections.
    • ECGDetectionsBatch: Localize characteristic points along a single channel ECG stored in a file.
    • ECGDetections: Localize characteristic points along a single channel ECG.
    • ECGFindPVC: Localize premature ventricular contraction with compensatory pause.
    • ECGRpeaks: find the locations of the R peaks of a single channel ECG.
    • ECGTwaveEnds_vs_annot: Comparison of the T wave end locations computed by ECGTwaveEnds with the QTDB annotations.
    • ECGTwaveEnds: find the locations of the T wave end of a single channel ECG.
  • Files
    • CWApath: Return the installation path of the CWA module.
    • ecgs2ecgs: Creates a Scilab ECG file from a part of another Scilab ECG file.
    • ecgsCat: Catenate ECG signals contains in two egcs files.
    • ecgsFileInfo: Return information about Scilab ECG file.
    • ecgs: Scilab ECG file format description.
    • exportHRV: Exports a summary of the data generated by HRVAS to an xml spread sheet.
    • extractPartFromEgcsFile: Get part of a multi channels Scilab ECG file.
    • gdfdatatype: Utility function, convert gdf data types to Scilab binary type.
    • getValuesFromEcgsFile: Get some specific values out of an ecgs file.
    • ISHNE2Ecgs: Converts a ISHNE 1.0 ECG file into a Scilab ECG (ecgs) file
    • MIT2Ecgs: Converts a MIT (*.HEA / *.DAT) ECG record into a Scilab ECG (ecgs) file.
    • mseek_big: A patch to set current position in a file.
    • readEgcsFile: Get the ECG data out of an Scilab ECG file.
    • readISHNEAnnotations: Read an ISHNE binary annotation file (.ann).
    • readISHNEHeader: Read the header of an ISHNE-1.0 file.
    • readISHNE: Read a ISHNE 1.0 ECG file.
    • readTMSHeader: Extract header information from TMS32/Poly5 file.
    • readTMS: Reads a TMS32/Poly5 (.S00) ECG file.
    • saveAsEgcs: Save an ECG array into a Scilab ECG file
    • TMS2Ecgs: Convert a TMS23/Poly5 (.S00) ECG file into a Scilab ECG (ecgs) file.
    • wfdbAnnot2String: Convert annotation code array to string array.
    • wfdbReadAnnotations: Read the annotation of a WFDB record.
    • wfdbReadSamples: Read the signals of a WFDB (MIT format) record.
    • writeEcgsFileInfo: Write the header of an ecgs file.
    • writeEcgsFile: Write an sciecg data structure in a file with ecgs format.
  • Pretreatment
    • DetrendRR: Removes the trend of a RR signal using various methods.
    • ECGCutPLIBatch: Remove power line interference in multi channel ECG contained into a Scilab ECG file (ecgs).
    • ECGCutPLI: Remove power line interference in multi channel ECG
    • ECGDetrendBatch: Remove baseline out of a multi derivation ECG stored in a Scilab ECG (ecgs) file.
    • ECGDetrend: Remove baseline out of a multi derivation ECG
    • ECGFilter: Apply a FIR filter to a multi-channel ECG.
    • ECGSubsampleBatch: Subsample a multi channel ECG contained in a Scilab ECG (ecgs) file.
    • ECGSubsample: Subsample a multi channel ECG.
    • ECGSubstractPLIBatch: Remove power line interference in multichannel ECG contained in a Scilab ECG (ecgs) file.
    • ECGSubstractPLI: Remove power line interference in multi channel ECG
    • medianFilter: Detect impulses in a signal
    • percentFilter: Detect data whose percent change from previous is greater than a threshold.
    • sdFilter: Detect data whose deviation from the average is greater than a threshold times the overall standard deviation.
    • threshFilter: Detect data which are outside a range.
    • replaceRROutliers: Replace the outliers of a RR signal.
    • SynthesisECGBatch: Computes the root mean square of a multi channel ECG stored in a Scilab ECG (ecgs) file.
    • SynthesisECG: Computes the root mean square of a multi channel ECG.
  • Tools
    • arBurg: AR model identification using Burg method.
    • besself: Bessel analog filter design.
    • dsearch2D: Classification of 2D sets.
    • easyspec: Easy smoothed spectrum estimate.
    • ECGWaveApprox: Approximate a single channel ECG by Gaussians.
    • ECGWaveGen: generates an ECG wave shape based on sum of Gaussians
    • ECGWaveReconstruct: Reconstruct the ECG signal given the parameters computed by ECGWaveApprox.
    • filtbyfft: passband filtering using fft/ifft.
    • fit_gaussian: Fit a 1D Gaussian function with experimental data.
    • gaussian: 1D Gaussian function.
    • gp_smooth: Smoothing by Gaussian process priors.
    • grp2idx: Find groups of equal values in an array.
    • HRVAS_DefaultSettings:
    • Levkov_f: Internal built-in used by ECGSubstractPLIBatch
    • Levkov: Remove power line interference in a single channel ECG.
    • loess: Non parametric regression using locally weighted linear least squares.
    • Lomb: Estimates the power spectral density of a signal using the Lomb periodogram method.
    • mahal: Compute Mahalanobis distance.
    • MultilevelAnalysis: Compute the large deviations spectrum of a signal.
    • mywaitbar: Manage a waitbar.
    • pBurg: Power spectral density using Burg's method.
    • polyfit: Fit a polynomial of given order with experimental data.
    • polylinecumlength: Compute the cumulative length of ND polyline.
    • polylinelength: Compute the length of ND polyline.
    • pWelch: Power spectral density using Welch's method.
    • Resample: Resample a discrete time signal
    • revert_bessel_roots: Return the roots of the normalized reversed Bessel.
    • sciecg: Create a Scilab ecg data structure.
    • segmentDensityMap: Returns a isolevel contour line of a 2D density map
    • sgolaydiff: Numerical derivatives computation using Savitzky-Golay filter.
    • sgolayfilt: Filter signal using Savitzky-Golay Filter.
    • sgolay: Savitzky-Golay Filter Design.
    • syntheticRRsignal: TBD
    • wfir_gui: Graphical user interface that can be used to interactively design wfir filters
    • writeXmlExcel: write excel xml file on any platform
    • wavelet:
  • Synthesis
    • ecgsyn: A realistic ECG signal generator.
    • ECGWaveApprox: Approximate a single channel ECG by Gaussians.
    • ECGWaveGen: Generates an ECG wave shape based on sum of Gaussians
    • ECGWaveReconstruct: Reconstruct the ECG signal given the parameters computed by ECGWaveApprox.
    • syntheticRRsignal: Short term RR representative synthetic signal generator.
  • Visualization
    • ECGSetMarks: Select the mark style to be used the represent each type of detection in graphics.
    • ECGShowDetections: Show the location of the ECG events.
    • ECGViewer: Interactive tool for visualization of ECG and detections
    • PoincareHRVPlot: Poincare's graph of the beat durations.
    • viewECG: Visualize a multi-channel ECG.

Development Team
Admins
Serge Steer

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